Structure of PDB 1p8v Chain C

Receptor sequence
>1p8vC (length=250) Species: 9606 (Homo sapiens) [Search protein sequence]
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW
DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDI
ALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEGQPS
VLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGP
FVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG
3D structure
PDB1p8v Crystal Structure of the GpIbalpha-Thrombin Complex Essential for Platelet Aggregation
ChainC
Resolution2.6 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H43 D99 E202 G203 D204 S205 G206
Catalytic site (residue number reindexed from 1) H43 D99 E194 G195 D196 S197 G198
Enzyme Commision number 3.4.21.5: thrombin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C E8 I9 M11 P13 W14 D113 H116 C119 L129 Y134 K135 G136 R137 N164 K212 P214 N217 R218 W219 E8 I9 M11 P13 W14 D113 H116 C119 L129 Y134 K135 G136 R137 N156 K204 P206 N209 R210 W211
BS02 DFP C H43 C201 G203 S205 H43 C193 G195 S197
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
GO:0005509 calcium ion binding
Biological Process
GO:0006508 proteolysis
GO:0007596 blood coagulation

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Molecular Function
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Biological Process
External links
PDB RCSB:1p8v, PDBe:1p8v, PDBj:1p8v
PDBsum1p8v
PubMed12855811
UniProtP00734|THRB_HUMAN Prothrombin (Gene Name=F2)

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