Structure of PDB 1nov Chain C

Receptor sequence
>1novC (length=324) Species: 12288 (Nodamura virus) [Search protein sequence]
RRRAAPRQQQRQQSNRALKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQ
GLVLPKKHCLTQSITFTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPL
ASVEFPGFDQLFGTSATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQV
YKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFI
EGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGARYT
GLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPAN
DEYALAAYRKIARDIPIAVACKDN
3D structure
PDB1nov Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals.
ChainC
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C L64 K68 F71 A72 D75 F76 Y240 Y342 K349 I350 I354 V358 D362 N363 L25 K29 F32 A33 D36 F37 Y204 Y303 K310 I311 I315 V319 D323 N324
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nov, PDBe:1nov, PDBj:1nov
PDBsum1nov
PubMed15299863
UniProtP12871|CAPSD_NODAM Capsid protein alpha (Gene Name=alpha)

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