Structure of PDB 1nkk Chain C

Receptor sequence
>1nkkC (length=226) Species: 10359 (Human betaherpesvirus 5) [Search protein sequence]
QQSQAVAPVYVGGFLARYDQSPDEARLLLPRDVVEHWLHAQVALPLNINH
DDTAVVGHVAAMQSVRDGLFCLGCVTSPRFLEIVRRASEKSELVSRGPVS
PLQPDKVVEFLSGSYAGLSLSSRRCDDVETTPFKHVALCSVGRRRGTLAV
YGRDPEWVTQRFPDLTAADRDGLRAQWQRCGDPFRSDSYGLLGNSVDALY
IRERLPKLRYDKQLVGVTERESYVKA
3D structure
PDB1nkk Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
ChainC
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.21.97: assemblin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C R1031 H1063 S1132 S1134 S1135 R1136 R1137 G1164 R1165 R26 H50 S119 S121 S122 R123 R124 G142 R143
BS02 peptide C H1063 S1132 R1165 H50 S119 R143
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1nkk, PDBe:1nkk, PDBj:1nkk
PDBsum1nkk
PubMed12549906
UniProtP16753|SCAF_HCMVA Capsid scaffolding protein (Gene Name=UL80)

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