Structure of PDB 1njt Chain C

Receptor sequence
>1njtC (length=222) Species: 10359 (Human betaherpesvirus 5) [Search protein sequence]
DEQQSQAVAPVYVGGFLARYDQSPDEAELLLPRDVVEHWLHAALPLNINH
DDTAVVGHVAAMQSVRDGLFCLGCVTSPRFLEIVRRASEKSELVSRGPVS
PLQPDKVVEFLSGSYAGLSLSSRRCDTTPFKHVALCSVGRRRGTLAVYGR
DPEWVTQRFPDLTAADRDGLRAQWQSGDPFRSDSYGLLGNSVDALYIRER
LPKLRYDKQLVGVTERESYVKA
3D structure
PDB1njt Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
ChainC
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.4.21.97: assemblin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C H1063 S1132 L1133 S1134 S1135 R1136 R1137 G1164 R1165 H50 S119 L120 S121 S122 R123 R124 G139 R140
BS02 peptide C H1063 S1132 R1165 H50 S119 R140
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1njt, PDBe:1njt, PDBj:1njt
PDBsum1njt
PubMed12549906
UniProtP16753|SCAF_HCMVA Capsid scaffolding protein (Gene Name=UL80)

[Back to BioLiP]