Structure of PDB 1nd3 Chain C

Receptor sequence
>1nd3C (length=238) Species: 31708 (rhinovirus A16) [Search protein sequence]
GLPVYVTPGSGQFMTTDDMQSPCALPWYHPTKEIFIPGEVKNLIEMCQVD
TLIPINSTQSNIGNVSMYTVTLSPQTKLAEEIFAIKVDIASHPLATTLIG
EIASYFTHWTGSLRFSFMFCGTANTTLKVLLAYTPPGIGKPRSRKEAMLG
THVVWDVGLQSTVSLVVPWISASQYRFTTPDTYSSAGYITCWYQTNFVVP
PNTPNTAEMLCFVSGCKDFCLRMARDTDLHKQTGPITQ
3D structure
PDB1nd3 Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds
ChainC
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.22.28: picornain 3C.
3.4.22.29: picornain 2A.
3.6.1.15: nucleoside-triphosphate phosphatase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C D18 Q20 S21 C23 D18 Q20 S21 C23
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity

View graph for
Molecular Function
External links
PDB RCSB:1nd3, PDBe:1nd3, PDBj:1nd3
PDBsum1nd3
PubMed15452226
UniProtQ82122|POLG_HRV16 Genome polyprotein

[Back to BioLiP]