Structure of PDB 1l3l Chain C

Receptor sequence
>1l3lC (length=225) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence]
MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAV
TNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERA
FYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAA
TIGQIHARISFLAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKL
REAMKRFDVRSKAHLTALAIRRKLI
3D structure
PDB1l3l Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA.
ChainC
Resolution1.66 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C N203 R206 R210 N194 R197 R201
BS02 dna C M191 M213 R219 S220 K221 M182 M204 R210 S211 K212
BS03 LAE C L40 Y53 W57 Y61 D70 W85 F101 Y102 A105 L40 Y53 W57 Y61 D70 W85 F101 Y102 A105
Gene Ontology
Molecular Function
GO:0000976 transcription cis-regulatory region binding
GO:0001216 DNA-binding transcription activator activity
GO:0003677 DNA binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0009372 quorum sensing
GO:0045893 positive regulation of DNA-templated transcription
Cellular Component
GO:0032993 protein-DNA complex

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Biological Process
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Cellular Component
External links
PDB RCSB:1l3l, PDBe:1l3l, PDBj:1l3l
PDBsum1l3l
PubMed12087407
UniProtP33905|TRAR_RHIRD Transcriptional activator protein TraR (Gene Name=traR)

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