Structure of PDB 1h0m Chain C

Receptor sequence
>1h0mC (length=228) Species: 358 (Agrobacterium tumefaciens) [Search protein sequence]
MQHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAV
TNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERA
FYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAA
TIGQIHARISFLRTAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVR
VKLREAMKRFDVRSKAHLTALAIRRKLI
3D structure
PDB1h0m The Crystal Structure of the Quorum Sensing Protein Trar Bound to its Autoinducer and Target DNA
ChainC
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna C T190 M191 R219 S220 K221 T184 M185 R213 S214 K215
BS02 dna C N203 R206 R210 N197 R200 R204
BS03 LAE C L40 Y53 W57 Q58 Y61 D70 V72 W85 F101 Y102 A105 I110 T129 L40 Y53 W57 Q58 Y61 D70 V72 W85 F101 Y102 A105 I110 T129
Gene Ontology
Molecular Function
GO:0000976 transcription cis-regulatory region binding
GO:0001216 DNA-binding transcription activator activity
GO:0003677 DNA binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0009372 quorum sensing
GO:0045893 positive regulation of DNA-templated transcription
Cellular Component
GO:0032993 protein-DNA complex

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Cellular Component
External links
PDB RCSB:1h0m, PDBe:1h0m, PDBj:1h0m
PDBsum1h0m
PubMed12198141
UniProtP33905|TRAR_RHIRD Transcriptional activator protein TraR (Gene Name=traR)

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