Structure of PDB 1f8v Chain C

Receptor sequence
>1f8vC (length=311) Species: 103782 (Pariacoto virus) [Search protein sequence]
RLTDAGLAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVFTP
NTDTYIVVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQNGL
PAVNNYSKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTA
ITPAPGVFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKSTDF
EWCDFVRSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYKIS
TPTGAVNTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNLKM
RFPVAVSSREN
3D structure
PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
ChainC
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C K61 F64 A65 D68 Y240 E343 C344 N347 L348 R351 F352 E360 N361 K11 F14 A15 D18 Y190 E293 C294 N297 L298 R301 F302 E310 N311
BS02 CA C D249 E251 D199 E201
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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