Structure of PDB 1bs8 Chain C

Receptor sequence
>1bs8C (length=168) Species: 562 (Escherichia coli) [Search protein sequence]
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQ
VDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALV
PRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLK
QQRIRQKVEKLDRLKARA
3D structure
PDB1bs8 Iron center, substrate recognition and mechanism of peptide deformylase.
ChainC
Resolution2.2 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G1045 Q1050 C1090 L1091 H1132 E1133 H1136
Catalytic site (residue number reindexed from 1) G45 Q50 C90 L91 H132 E133 H136
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide C I1044 G1045 G1089 R1097 C1129 H1132 E1133 I44 G45 G89 R97 C129 H132 E133
BS02 ZN C C1090 H1132 H1136 C90 H132 H136
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008198 ferrous iron binding
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0043022 ribosome binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0043686 co-translational protein modification
Cellular Component
GO:0005829 cytosol

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Cellular Component
External links
PDB RCSB:1bs8, PDBe:1bs8, PDBj:1bs8
PDBsum1bs8
PubMed9846875
UniProtP0A6K3|DEF_ECOLI Peptide deformylase (Gene Name=def)

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