Structure of PDB 8ova Chain By

Receptor sequence
>8ovaBy (length=186) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence]
MKIKSHDQITFPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKL
RTFTAVRWFGNKINNSTINTALSHVRNMITGVTKGFRFKVRFAYAHFPIS
VTVENQLVEIRNFLGEKRVRRQVVADDVKVYRTDAALVKDELVLEGNDLE
QVSREAAVMHQLCLVKKKDIRKFLDGIYVQTKTNIE
3D structure
PDB8ova A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei.
ChainBy
Resolution2.47 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna By K166 D169 R171 K166 D169 R171
BS02 rna By H39 S66 N69 T70 S73 H74 F97 E116 K117 R118 E150 S153 Q161 K172 H39 S66 N69 T70 S73 H74 F97 E116 K117 R118 E150 S153 Q161 K172
BS03 rna By K4 R22 Q41 L42 R45 K49 R57 W58 K4 R22 Q41 L42 R45 K49 R57 W58
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ova, PDBe:8ova, PDBj:8ova
PDBsum8ova
PubMed37985661
UniProtQ38CD0

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