Structure of PDB 8apo Chain Bw

Receptor sequence

>8apoBw (length=349) Species: 353565 (Polytomella magna) [Search protein sequence]

SKILVEKRSPELTQEHIGNYYKVTTERVPEGFMPFHQAFYAKPDAGQERK
GGCRGIQHEFDISGHHNVMLRSSTLELFDLIKEGDKNRILLSGPTGTGKS
VALFSLVEWARQQDWIVLYIPSAFTLTRGGFFYRRPGTDLFDTLTSAQHL
LKGLLDCHQAQLAKLPLSSDDSKLLELVQKGLLNDDAHTAVDCCLEVVKE
LSLAAATQPVLFAIDGYNALFQHTDYGVTEGDIQVARRRLLKVEELTLAN
SMRLLERADLGKARVVVAPSWSIRSSLQVGKPVETTEFVMPRFDFAETAN
ALYYYQCCGLAPDVPTEKQAKLMQHITNGNAFEIRSLAIKMSMLKLNKL

3D structure

PDB

8apo Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	Bw	R175 F245 R249 H344 Q355 S393 I394 R395	R54 F124 R128 H223 Q234 S272 I273 R274
BS02	MG	Bw	S221 S391	S100 S270
BS03	ATP	Bw	E180 M190 T216 G219 K220 S221 V222 S391 W392 S393 A452 R456	E59 M69 T95 G98 K99 S100 V101 S270 W271 S272 A331 R335

External links

PDB	RCSB:8apo, PDBe:8apo, PDBj:8apo
PDBsum	8apo
PubMed	36253367

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