Structure of PDB 9f1d Chain Bh

Receptor sequence

>9f1dBh (length=122) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

AKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVR
KSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEES
LKTKKQQRKERLYPLRKYAVKA

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Bh	R70 K74 Y78 K79 R84 R89 R93 R94 L95 N96 K97 H98 E100 K106 R109 K110 R112	R69 K73 Y77 K78 R83 R88 R92 R93 L94 N95 K96 H97 E99 K105 R108 K109 R111
BS02	rna	Bh	A2 K3 K5 R7 S42 S45 R48 V49 R51 K52 A55 R56 L58 T59 N62 Q63 K66 R70 L81 K86 T88 R89 R92	A1 K2 K4 R6 S41 S44 R47 V48 R50 K51 A54 R55 L57 T58 N61 Q62 K65 R69 L80 K85 T87 R88 R91

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1SIT5\|RL35_RABIT Large ribosomal subunit protein uL29 (Gene Name=RPL35)