Structure of PDB 9f1d Chain Bf

Receptor sequence

>9f1dBf (length=110) Species: 9986 (Oryctolagus cuniculus)

MSGRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYV
YKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHR
IRVMLYPSRI

3D structure

• PDB: 9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.
• Chain: Bf
• Resolution: 3.26 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Bf	M1 S2 G3 R4 W6 K8 K15 R16 L18 R19 N20 Q21 R22 E23 H24 K29 Y34 R36 Y51 K52 K54 N55 T57 V58 T59 P60 T67 R68 V69 W71 K73 R76 H78 N80 S81 R85 K87 R89 N91 P93 A94 K95 H99 R100 R102 R109	M1 S2 G3 R4 W6 K8 K15 R16 L18 R19 N20 Q21 R22 E23 H24 K29 Y34 R36 Y51 K52 K54 N55 T57 V58 T59 P60 T67 R68 V69 W71 K73 R76 H78 N80 S81 R85 K87 R89 N91 P93 A94 K95 H99 R100 R102 R109

External links

• PDB: RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
• PDBsum: 9f1d
• PubMed: 39169182
• UniProt: G1SF08|RL35A_RABIT Large ribosomal subunit protein eL33 (Gene Name=RPL35A)