Structure of PDB 4v7r Chain Bd

Receptor sequence

>4v7rBd (length=72) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

GKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGA
KAKRRHTTGTGRMRYLKHVSRR

3D structure

PDB

4v7r Crystal structure of the eukaryotic ribosome.

Chain

Resolution

4.0 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	Bd	G2 K3 T5 P6 G9 R11 H12 N13 K14 S15 S35 K43	G1 K2 T4 P5 G8 R10 H11 N12 K13 S14 S34 K42
BS02	rna	Bd	T17 C22 K54 R55 R56 H57 T58 T59 R63 M64 L67 S71 R72	T16 C21 K53 R54 R55 H56 T57 T58 R62 M63 L66 S70 R71
BS03	OHX	Bd	C19 R21 C22 G23 C34 S36 C37	C18 R20 C21 G22 C33 S35 C36
BS04	OHX	Bd	R55 R56	R54 R55

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008270	zinc ion binding
GO:0019843	rRNA binding
GO:0046872	metal ion binding

	Biological Process
GO:0000448	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0030687	preribosome, large subunit precursor
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v7r, PDBe:4v7r, PDBj:4v7r
PDBsum	4v7r
PubMed	21109664
UniProt	P49166\|RL37A_YEAST Large ribosomal subunit protein eL37A (Gene Name=RPL37A)