Structure of PDB 6sv4 Chain Bb

Receptor sequence

>6sv4Bb (length=206) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

FTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPIF
VAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLD
IINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVN
QAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELER
VAKSNR

3D structure

PDB

6sv4 RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1.

Chain

Resolution

3.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	Bb	H72 A74 A78 N79 K80 R81 K84 R92 N95 M98 N100 G101 R102 N103 N104 G105 K106 K107 K109 R112 R166 N169 R180 A183 F184 R185 N186 I187 T189 I190	H53 A55 A59 N60 K61 R62 K65 R73 N76 M79 N81 G82 R83 N84 N85 G86 K87 K88 K90 R93 R147 N150 R161 A164 F165 R166 N167 I168 T170 I171

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003729	mRNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6sv4, PDBe:6sv4, PDBj:6sv4
PDBsum	6sv4
PubMed	32203490
UniProt	A0A1L4AA68

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