Structure of PDB 9f1d Chain BY

Receptor sequence

>9f1dBY (length=134) Species: 9986 (Oryctolagus cuniculus)

MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIR
KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIH
PSKVVITRLKLDKDRKKILERKAKSRQVGKEKGK

3D structure

• PDB: 9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.
• Chain: BY
• Resolution: 3.26 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BY	M1 K2 F3 N4 P5 T8 S9 R11 N14 R15 R17 H18 K28 S31 P33 K36 R45 S46 R59 G60 H61 K63 R87 K89 A90 H100 S102 K103 R121 S125 R126 K130 K132	M1 K2 F3 N4 P5 T8 S9 R11 N14 R15 R17 H18 K28 S31 P33 K36 R45 S46 R59 G60 H61 K63 R87 K89 A90 H100 S102 K103 R121 S125 R126 K130 K132
BS02	rna	BY	R11 R15 K16 F19 N20 P22 S23 H24 R27 R50 K51 Q72 V73 Y74 R75 K76 K113 D114 I118	R11 R15 K16 F19 N20 P22 S23 H24 R27 R50 K51 Q72 V73 Y74 R75 K76 K113 D114 I118

External links

• PDB: RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
• PDBsum: 9f1d
• PubMed: 39169182
• UniProt: G1SQH0|RL26_RABIT Large ribosomal subunit protein uL24 (Gene Name=RPL26)