Structure of PDB 4v6l Chain BY

Receptor sequence

>4v6lBY (length=77) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRV
SAKGMRVIDKKGIDTVLAELRARGEKY

3D structure

PDB

4v6l Structural insights into cognate versus near-cognate discrimination during decoding.

Chain

Resolution

13.2 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BY	S1 K9 R10 V12 T13 N15 N16 R17 H19 A20 L21 N22 A23 K25 R26 R27 F28 L29 P30 N31 H33 S34 H35 R36 K43 R44 A52 K53 M55 R56 V57 K60 K61 K76	S1 K9 R10 V12 T13 N15 N16 R17 H19 A20 L21 N22 A23 K25 R26 R27 F28 L29 P30 N31 H33 S34 H35 R36 K43 R44 A52 K53 M55 R56 V57 K60 K61 K76

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v6l, PDBe:4v6l, PDBj:4v6l
PDBsum	4v6l
PubMed	21378755
UniProt	P0A7M2\|RL28_ECOLI Large ribosomal subunit protein bL28 (Gene Name=rpmB)