Structure of PDB 4v8m Chain BX

Receptor sequence

>4v8mBX (length=121) [Search protein sequence]

TKRKAYTRPQFRRPHTYRRPATVKPSSNVSAIKNKWDAFRIIRYPLTTDK
AMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPDGLKK
AYIRLSASYDALDTANKMGLV

3D structure

PDB

4v8m High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.

Chain

Resolution

5.57 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	BX	R51 F54 R55 R56 H58 Y60 R61 R62 A64 V66 T91 K93 K97 N101 K131 N133 T134 L135 R137 K143 Y145 R147	R8 F11 R12 R13 H15 Y17 R18 R19 A21 V23 T48 K50 K54 N58 K88 N90 T91 L92 R94 K100 Y102 R104
BS02	rna	BX	R51 P52 Q53 N113 K114	R8 P9 Q10 N70 K71
BS03	rna	BX	R46 K47 Y60 K67 S69 S70 N71 V72 I75 K76 K78 R83 R111 N113 T115 E116 K119 K128	R3 K4 Y17 K24 S26 S27 N28 V29 I32 K33 K35 R40 R68 N70 T72 E73 K76 K85

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0006412	translation
GO:0042254	ribosome biogenesis

	Cellular Component
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links