Structure of PDB 4v4h Chain BW

Receptor sequence
>4v4hBW (length=84) Species: 562 (Escherichia coli) [Search protein sequence]
AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANV
GCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE
3D structure
PDB4v4h Structural analysis of kasugamycin inhibition of translation.
ChainBW
Resolution3.46 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BW V50 R54 V50 R54
BS02 rna BW A1 K3 K4 A5 G7 S8 R10 G12 R13 D14 E16 K18 L20 V22 K23 R24 F25 S29 V30 L31 I36 R38 D55 K65 E69 A1 K3 K4 A5 G7 S8 R10 G12 R13 D14 E16 K18 L20 V22 K23 R24 F25 S29 V30 L31 I36 R38 D55 K65 E69
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0043022 ribosome binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0001558 regulation of cell growth
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042256 cytosolic ribosome assembly
GO:0090070 positive regulation of ribosome biogenesis
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v4h, PDBe:4v4h, PDBj:4v4h
PDBsum4v4h
PubMed16998486
UniProtP0A7L8|RL27_ECOLI Large ribosomal subunit protein bL27 (Gene Name=rpmA)

[Back to BioLiP]