Structure of PDB 8ova Chain BV

Receptor sequence
>8ovaBV (length=122) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence]
VAVRAKVGSRGFTRQRQLAKGKKVFKIDCSIPASDGIFSDDILSNFQQYF
QDNVKLNGRKGKLTSKVRVNMRENTLSITTTMAYRKKYFKYLTKKFLKKK
DLRDWIRILAKGKDTYQLKYFN
3D structure
PDB8ova A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei.
ChainBV
Resolution2.47 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BV V2 A3 R5 K7 V8 G9 V1 A2 R4 K6 V7 G8
BS02 rna BV V8 G9 V7 G8
BS03 rna BV Q16 K56 G59 R86 K88 Y89 Y92 K96 K99 K100 F122 N123 Q15 K55 G58 R85 K87 Y88 Y91 K95 K98 K99 F121 N122
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8ova, PDBe:8ova, PDBj:8ova
PDBsum8ova
PubMed37985661
UniProtQ383R3

[Back to BioLiP]