Structure of PDB 4v6o Chain BV

Receptor sequence

>4v6oBV (length=100) Species: 562 (Escherichia coli)

MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKL
FEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE

3D structure

• PDB: 4v6o Structural characterization of mRNA-tRNA translocation intermediates.
• Chain: BV
• Resolution: 14.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BV	M1 I2 E4 L7 K9 R12 H15 S17 E18 K19 A20 S21 M24 N28 T39 K40 A41 E42 K44 E56 V57 N59 T60 L61 K64 K66 V67 K68 R69 H70 Q72 R73 I74 G75 R76 R77 W80 K81 K82 Y84 K88	M1 I2 E4 L7 K9 R12 H15 S17 E18 K19 A20 S21 M24 N28 T39 K40 A41 E42 K44 E56 V57 N59 T60 L61 K64 K66 V67 K68 R69 H70 Q72 R73 I74 G75 R76 R77 W80 K81 K82 Y84 K88

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding
• GO:0019843 rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v6o, PDBe:4v6o, PDBj:4v6o
• PDBsum: 4v6o
• PubMed: 22467828
• UniProt: P0ADZ0|RL23_ECOLI Large ribosomal subunit protein uL23 (Gene Name=rplW)