Structure of PDB 8evt Chain BU

Receptor sequence

>8evtBU (length=107) Species: 4932 (Saccharomyces cerevisiae)

QQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLK
ISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDV
EVVVASN

3D structure

• PDB: 8evt Regulation of translation by ribosomal RNA pseudouridylation.
• Chain: BU
• Resolution: 2.2 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	U	BU	S66 W79	S52 W65
BS02	G	BU	T67 R68	T53 R54
BS03	4AC	BU	K69 T70	K55 T56
BS04	G	BU	K69 S76 T78	K55 S62 T64
BS05	A	BU	K53 G54 V56	K39 G40 V42
BS06	U	BU	R23 L58 Y90	R9 L44 Y76
BS07	G	BU	V31 R57 H87 R89	V17 R43 H73 R75
BS08	G	BU	N72 E74	N58 E60
BS09	A	BU	L58 P59 K61 K88	L44 P45 K47 K74
BS10	A	BU	E74 G75	E60 G61
BS11	C	BU	R68 G73 K77	R54 G59 K63

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 22 22:00:52 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8evt', asym_id = 'BU', title = 'Regulation of translation by ribosomal RNA pseudouridylation.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8evt', asym_id='BU', title='Regulation of translation by ribosomal RNA pseudouridylation.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '8evt', asym_id = 'BU'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='8evt', asym_id='BU')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>