Structure of PDB 8evs Chain BU

Receptor sequence

>8evsBU (length=107) Species: 4932 (Saccharomyces cerevisiae)

QQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLK
ISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDV
EVVVASN

3D structure

• PDB: 8evs Regulation of translation by ribosomal RNA pseudouridylation.
• Chain: BU
• Resolution: 2.62 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	U	BU	S66 W79	S52 W65
BS02	A	BU	G54 V56	G40 V42
BS03	U	BU	R23 Y90	R9 Y76
BS04	A	BU	R57 L58 T60 R89	R43 L44 T46 R75
BS05	G	BU	H87 R89	H73 R75
BS06	G	BU	N72 E74	N58 E60
BS07	A	BU	L58 P59 K61 K88	L44 P45 K47 K74
BS08	G	BU	S66 T67 R68 W79	S52 T53 R54 W65
BS09	A	BU	E74 G75	E60 G61
BS10	C	BU	G73 K77	G59 K63

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Apr 6 21:11:38 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8evs', asym_id = 'BU', title = 'Regulation of translation by ribosomal RNA pseudouridylation.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8evs', asym_id='BU', title='Regulation of translation by ribosomal RNA pseudouridylation.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '8evs', asym_id = 'BU'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='8evs', asym_id='BU')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>