Structure of PDB 9f1d Chain BT

Receptor sequence

>9f1dBT (length=159) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

TNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKG
MPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKS
RDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELL
EPIPYEFMA

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BT	T2 N3 T4 K5 G6 K7 R8 R9 G10 R12 Y13 M14 S16 R17 F19 H22 G23 K35 D41 K43 Q49 G51 H54 K55 Y57 H58 G59 K60 T61 T68 Q69 H70 K78 V80 K83 L85 K87 R88 I89 N90 R92 K100 F105 R108 V109 D113 K116 K120 W125 V126 K129 R130 F140 R142	T1 N2 T3 K4 G5 K6 R7 R8 G9 R11 Y12 M13 S15 R16 F18 H21 G22 K34 D40 K42 Q48 G50 H53 K54 Y56 H57 G58 K59 T60 T67 Q68 H69 K77 V79 K82 L84 K86 R87 I88 N89 R91 K99 F104 R107 V108 D112 K115 K119 W124 V125 K128 R129 F139 R141
BS02	rna	BT	R20 P26 L27 A28	R19 P25 L26 A27

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1SHQ2\|RL21_RABIT Large ribosomal subunit protein eL21 (Gene Name=RPL21)

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