Structure of PDB 8q87 Chain BS

Receptor sequence

>8q87BS (length=176) Species: 9031 (Gallus gallus) [Search protein sequence]

MKASGTLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQ
LKKMKKSSGEIVYCGQVYEKTPLRVKNFGIWLRYDSRSGTHNMYREYRDL
TTAGAVTQCYRDMGARHRARAHSIQIMKVEQIAASKCRRPAVKQFHDSKI
KFPLPHRVLRRQHKPRFTTKRPNTFF

3D structure

PDB

8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells

Chain

Resolution

2.4 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BS	K2 A3 S4 G5 R8 Y63 Q66 V67 Y68 E69 K70 P72 L73 S86 R87 S88 H91 N92 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 A133 A134 S135 R139 F145 H146 D147 S148 K149 P155 H156 R157 V158 R160 R161 H163 K164 P165 R166 T168 T169 K170 R171 P172 N173 T174 F175 F176	K2 A3 S4 G5 R8 Y63 Q66 V67 Y68 E69 K70 P72 L73 S86 R87 S88 H91 N92 M93 Y94 R95 R98 R111 G114 A115 R116 H117 R118 R120 A133 A134 S135 R139 F145 H146 D147 S148 K149 P155 H156 R157 V158 R160 R161 H163 K164 P165 R166 T168 T169 K170 R171 P172 N173 T174 F175 F176
BS02	rna	BS	S42 R43 Y46 S49 K53 K55 K56 S57 R87 R120 H122	S42 R43 Y46 S49 K53 K55 K56 S57 R87 R120 H122

External links

PDB	RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum	8q87
PubMed

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