Structure of PDB 6gz3 Chain BS

Receptor sequence

>6gz3BS (length=139) Species: 9986 (Oryctolagus cuniculus)

VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLT
KRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL
DNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRR

3D structure

• PDB: 6gz3 tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis.
• Chain: BS
• Resolution: 3.6 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BS	R24 K25 F28 G35 V36 G37 R38 R39 Y40 W82 N85 Q87 D89 L107 H120 R121 R124 R130 V131 R132 Q134 H135 T136 K137 T138 T139 R141 R142	R21 K22 F25 G32 V33 G34 R35 R36 Y37 W79 N82 Q84 D86 L104 H117 R118 R121 R127 V128 R129 Q131 H132 T133 K134 T135 T136 R138 R139

Gene Ontology

Molecular Function

• GO:0003676 nucleic acid binding
• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:0022626 cytosolic ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6gz3, PDBe:6gz3, PDBj:6gz3
• PDBsum: 6gz3
• PubMed: 30517857
• UniProt: G1TPG3|RS18_RABIT Small ribosomal subunit protein uS13 (Gene Name=RPS18)