Structure of PDB 9f1d Chain BR

Receptor sequence

>9f1dBR (length=180) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLII
RKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRI
LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKAR
KKLLADQAEARRSKTKEARKRREERLQAKK

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BR	R5 R9 L10 R16 G18 K19 K20 K21 W23 L24 P26 S37 R38 Q39 Q40 R42 K43 K46 T56 H58 S59 R60 R62 R64 R71 R74 H75 G77 I78 G79 R81 K82 G83 T84 N86 A87 R88 P90 K92 W95 M96 R97 R100 I101 R103 R108 R110 K114 R117 H118 Y120 H121 Y124 L125 K128 G129 N130 N134 K135 R136 H143	R4 R8 L9 R15 G17 K18 K19 K20 W22 L23 P25 S36 R37 Q38 Q39 R41 K42 K45 T55 H57 S58 R59 R61 R63 R70 R73 H74 G76 I77 G78 R80 K81 G82 T83 N85 A86 R87 P89 K91 W94 M95 R96 R99 I100 R102 R107 R109 K113 R116 H117 Y119 H120 Y123 L124 K127 G128 N129 N133 K134 R135 H142
BS02	rna	BR	A159 R162 R163 K165 T166 R170 R172 R176	A158 R161 R162 K164 T165 R169 R171 R175

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TJR3

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