Structure of PDB 9f1d Chain BQ

Receptor sequence

>9f1dBQ (length=187) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRL
FMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRVQEVPKLKVC
ALRVTSRARSRILKAGGKILTFDQLALDSPKGRGTVLLSGPRKGREVYRH
FGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BQ	G2 H7 N8 D10 R11 K12 V13 R14 R15 S20 K30 F34 R37 R38 T42 Q45 K49 R50 M53 S54 R55 T56 S62 S64 R65 R68 K69 K71 L72 P73 R75 K78 T85 T87 D88 D89 V90 R91 R104 T106 S107 R108 R134 G135 L138 S140 P142 R143 K144 G145 R146 V148 R150 F152 P159 H160 H162 K164 Y166 R168 S169 K170 R172 K173 R176 R181 S183 R184 G185 Y186 K187	G1 H6 N7 D9 R10 K11 V12 R13 R14 S19 K29 F33 R36 R37 T41 Q44 K48 R49 M52 S53 R54 T55 S61 S63 R64 R67 K68 K70 L71 P72 R74 K77 T84 T86 D87 D88 V89 R90 R103 T105 S106 R107 R133 G134 L137 S139 P141 R142 K143 G144 R145 V147 R149 F151 P158 H159 H161 K163 Y165 R167 S168 K169 R171 K172 R175 R180 S182 R183 G184 Y185 K186

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182

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