Structure of PDB 8q87 Chain BQ

Receptor sequence

>8q87BQ (length=187) Species: 9031 (Gallus gallus) [Search protein sequence]

GVDIRHNKDRKVRRREPKSQDIYLRLLVKLYRFLARRTNSAFNKVVLKRL
FMSRTNRPPLALSRMTRKMKLPGRENKTAVVVGTVTDDVRIQEVPKLKVC
ALRVTKGARTRILRAGGSVLTFDQLAMAAPKGKGTVLLSGPRKGREVYRH
FGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYKN

3D structure

PDB

8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells

Chain

Resolution

2.4 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BQ	G2 H7 N8 D10 R11 K12 V13 R14 R15 R16 K19 S20 K30 F34 R37 R38 N40 A42 F43 K45 K49 M53 S54 R55 T56 N57 S64 R65 R68 K69 L72 P73 R75 K78 T85 T87 D88 D89 V90 R91 R104 T106 K107 K132 K134 G135 T136 L138 L139 S140 P142 R143 K144 G145 R146 E147 V148 R150 F152 T158 P159 H160 H162 K164 P165 Y166 R168 S169 K170 R172 K173 F174 E175 R176 R178 R180 R181 S183 R184 G185 Y186 K187 N188	G1 H6 N7 D9 R10 K11 V12 R13 R14 R15 K18 S19 K29 F33 R36 R37 N39 A41 F42 K44 K48 M52 S53 R54 T55 N56 S63 R64 R67 K68 L71 P72 R74 K77 T84 T86 D87 D88 V89 R90 R103 T105 K106 K131 K133 G134 T135 L137 L138 S139 P141 R142 K143 G144 R145 E146 V147 R149 F151 T157 P158 H159 H161 K163 P164 Y165 R167 S168 K169 R171 K172 F173 E174 R175 R177 R179 R180 S182 R183 G184 Y185 K186 N187

External links

PDB	RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum	8q87
PubMed

[Back to BioLiP]