Structure of PDB 4v4y Chain BQ

Receptor sequence

>4v4yBQ (length=117) Species: 300852 (Thermus thermophilus HB8)

RHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHL
IHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLA
ERRRGDGAPLALVELVE

3D structure

• PDB: 4v4y Structural basis for messenger RNA movement on the ribosome.
• Chain: BQ
• Resolution: 5.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BQ	R2 H3 L4 K5 R8 K9 N11 R12 H13 S14 S15 H16 A19 L20 N23 Q24 H31 I34 T35 T36 T37 P39 K40 K42 R45 G46 D49 H50 H53 H61 R63 L65 R68 Q71 V73 R77 R90 Q91 G92 G93 T95 R96 L98 K99 R104 R105 G106 D107 V117	R1 H2 L3 K4 R7 K8 N10 R11 H12 S13 S14 H15 A18 L19 N22 Q23 H30 I33 T34 T35 T36 P38 K39 K41 R44 G45 D48 H49 H52 H60 R62 L64 R67 Q70 V72 R76 R89 Q90 G91 G92 T94 R95 L97 K98 R103 R104 G105 D106 V116

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v4y, PDBe:4v4y, PDBj:4v4y
• PDBsum: 4v4y
• PubMed: 17051149
• UniProt: Q9Z9H5|RL17_THET8 Large ribosomal subunit protein bL17 (Gene Name=rplQ)