Structure of PDB 9f1d Chain BP

Receptor sequence

>9f1dBP (length=159) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDV
TLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESN
AELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT
EKEQIVPKP

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BP	V2 R3 L6 R18 S20 R23 H25 K27 R30 Q34 K43 K54 R62 Y63 N64 G65 G66 G68 R69 A71 Q72 K74 Q75 W78 Q80 R82 W83 P84 K85 K86 K96 N97 S100 N101 H116 Q118 V119 M125 R127 T129 Y130 R131 A132 H133 G134 I136 N137 P138 Y139 M140 S141	V1 R2 L5 R17 S19 R22 H24 K26 R29 Q33 K42 K53 R61 Y62 N63 G64 G65 G67 R68 A70 Q71 K73 Q74 W77 Q79 R81 W82 P83 K84 K85 K95 N96 S99 N100 H115 Q117 V118 M124 R126 T128 Y129 R130 A131 H132 G133 I135 N136 P137 Y138 M139 S140
BS02	rna	BP	S5 R61 R62 W78 N120 K121 P123	S4 R60 R61 W77 N119 K120 P122

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1SCJ6\|RL17_RABIT Large ribosomal subunit protein uL22 (Gene Name=RPL17)

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