Structure of PDB 4v8q Chain BP

Receptor sequence
>4v8qBP (length=83) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLK
VDVERARYWLSVGAQPTDTARRLLRQAGVFRQE
3D structure
PDB4v8q Decoding in the absence of a codon by tmRNA and SmpB in the ribosome.
ChainBP
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BP M1 K3 R5 L6 R8 G10 S11 K12 H13 H16 Y17 D23 R25 R26 K27 R28 G30 K31 Y38 P41 R42 K43 T44 T45 S61 Q65 T67 T69 R72 R75 F80 Q82 M1 K3 R5 L6 R8 G10 S11 K12 H13 H16 Y17 D23 R25 R26 K27 R28 G30 K31 Y38 P41 R42 K43 T44 T45 S61 Q65 T67 T69 R72 R75 F80 Q82
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:4v8q, PDBe:4v8q, PDBj:4v8q
PDBsum4v8q
PubMed22422985
UniProtQ5SJH3|RS16_THET8 Small ribosomal subunit protein bS16 (Gene Name=rpsP)

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