Structure of PDB 9f1d Chain BO

Receptor sequence

>9f1dBO (length=199) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKY
LAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKV
FDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTA
TLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKISKFTDVLKTHGLLV

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BO	R12 G17 R18 L28 R37 S44 Y48 R49 L52 K60 R61 M62 N63 N65 P66 S67 R68 P70 Y71 H72 F73 R74 R82 T83 R85 M87 H90 K91 K93 R94 Q96 F105 I108 P110 K114 K115 K116 R117 R128 L129 K130 R133 E144 K148 Y149 L156 E157 A164 K165 H167 Y168 R169 K171 K172 M175 R176 K188 L201 V203	R8 G13 R14 L24 R33 S40 Y44 R45 L48 K56 R57 M58 N59 N61 P62 S63 R64 P66 Y67 H68 F69 R70 R78 T79 R81 M83 H86 K87 K89 R90 Q92 F101 I104 P106 K110 K111 K112 R113 R124 L125 K126 R129 E140 K144 Y145 L152 E153 A160 K161 H163 Y164 R165 K167 K168 M171 R172 K184 L197 V199

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TVS8\|RL13A_RABIT Large ribosomal subunit protein uL13 (Gene Name=RPL13A)

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