Structure of PDB 4v6o Chain BO

Receptor sequence

>4v6oBO (length=136) Species: 562 (Escherichia coli) [Search protein sequence]

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

PDB

4v6o Structural characterization of mRNA-tRNA translocation intermediates.

Chain

Resolution

14.7 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	BO	E47 R51 R55 P77 L78 N88 E90	E47 R51 R55 P77 L78 N88 E90
BS02	rna	BO	R16 N17 G19 L20 R38 Q97 P98	R16 N17 G19 L20 R38 Q97 P98
BS03	rna	BO	K5 R6 T7 K8 F9 R10 K11 M12 H13 K14 G15 R16 N17 R18 L20 A21 Q22 F28 R40 R44 Q45 E47 A48 R51 R55 R59 K62 W64 I65 R66 F68 D70 T74 E75 K76 L78 A79 V80 R81 M82 G83 K84 G85 K86 L95 K100 R114 K118 A121 A122 K123 L124 P125 K127 F130	K5 R6 T7 K8 F9 R10 K11 M12 H13 K14 G15 R16 N17 R18 L20 A21 Q22 F28 R40 R44 Q45 E47 A48 R51 R55 R59 K62 W64 I65 R66 F68 D70 T74 E75 K76 L78 A79 V80 R81 M82 G83 K84 G85 K86 L95 K100 R114 K118 A121 A122 K123 L124 P125 K127 F130

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v6o, PDBe:4v6o, PDBj:4v6o
PDBsum	4v6o
PubMed	22467828
UniProt	P0ADY7\|RL16_ECOLI Large ribosomal subunit protein uL16 (Gene Name=rplP)