Structure of PDB 9f1d Chain BN

Receptor sequence

>9f1dBN (length=203) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRL
GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSV
AEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWI
TKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLH
RYR

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BN	G2 Y4 K5 Q8 R12 K14 Q15 R24 W28 R31 Q32 H37 P40 R41 R44 K47 R49 R50 L51 K54 A55 K56 Q57 R65 R67 R68 G69 G70 R71 K72 R73 P74 K77 Y81 G82 K83 P84 V85 H86 H87 N90 Q91 K93 F94 A95 R96 S97 E104 R105 R108 A112 W120 S125 Y127 K128 F138 K140 R144 W150 H156 K157 M161 R162 L164 S166 R169 K170 S171 R172 K176 G177 H178 K179 H181 H182 G185 G186 S187 R189 W192 R193 R194 Q199 H201 R202 Y203 R204	G1 Y3 K4 Q7 R11 K13 Q14 R23 W27 R30 Q31 H36 P39 R40 R43 K46 R48 R49 L50 K53 A54 K55 Q56 R64 R66 R67 G68 G69 R70 K71 R72 P73 K76 Y80 G81 K82 P83 V84 H85 H86 N89 Q90 K92 F93 A94 R95 S96 E103 R104 R107 A111 W119 S124 Y126 K127 F137 K139 R143 W149 H155 K156 M160 R161 L163 S165 R168 K169 S170 R171 K175 G176 H177 K178 H180 H181 G184 G185 S186 R188 W191 R192 R193 Q198 H200 R201 Y202 R203
BS02	rna	BN	R38 V60 Y62 H109 D136	R37 V59 Y61 H108 D135

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1T0C1\|RL15_RABIT Large ribosomal subunit protein eL15 (Gene Name=RPL15)

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