Structure of PDB 4v65 Chain BN

Receptor sequence

>4v65BN (length=267) Species: 562 (Escherichia coli) [Search protein sequence]

VKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRH
IGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRY
ILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQ
LARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLR
VLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTK
GKKTRSNKRTDKFIVRR

3D structure

PDB

4v65 The Structure of the E. coli Ribosome Before and After Accommodation: Implications for Proofreading

Chain

Resolution

9.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BN	R12 R13 H14 K17 V18 L23 K25 F29 L32 E34 K38 S39 G41 R42 N44 N45 G46 R47 I48 T49 R51 H52 I53 G54 G56 H57 K58 Q59 A60 Y61 R62 V64 F66 G72 P74 Y82 P84 R86 K96 D97 G98 R100 M145 K146 G148 K149 Q152 L153 A154 R155 A157 G158 T159 L175 R176 S177 R181 K206 A207 A209 R211 W212 R213 R216 V219 R220 G221 T222 M224 N225 P226 V227 P230 H231 G232 E235 R237 G240 K241 P243 V244 T245 P246 W247 V249 Q250 T251 K252 G253 K254 K255 R257 N259 K260 R261 T262 R268 R269	R10 R11 H12 K15 V16 L21 K23 F27 L30 E32 K36 S37 G39 R40 N42 N43 G44 R45 I46 T47 R49 H50 I51 G52 G54 H55 K56 Q57 A58 Y59 R60 V62 F64 G70 P72 Y80 P82 R84 K94 D95 G96 R98 M143 K144 G146 K147 Q150 L151 A152 R153 A155 G156 T157 L173 R174 S175 R179 K204 A205 A207 R209 W210 R211 R214 V217 R218 G219 T220 M222 N223 P224 V225 P228 H229 G230 E233 R235 G238 K239 P241 V242 T243 P244 W245 V247 Q248 T249 K250 G251 K252 K253 R255 N257 K258 R259 T260 R266 R267

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0016740	transferase activity
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0032297	negative regulation of DNA-templated DNA replication initiation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990082	DnaA-L2 complex
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:4v65, PDBe:4v65, PDBj:4v65
PDBsum	4v65
PubMed
UniProt	P60422\|RL2_ECOLI Large ribosomal subunit protein uL2 (Gene Name=rplB)

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