Structure of PDB 6sv4 Chain BM

Receptor sequence

>6sv4BM (length=157) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

SAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKR
VVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKF
NVEYFAKEKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGD
KPHMLKF

3D structure

PDB

6sv4 RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1.

Chain

Resolution

3.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BM	S2 W9 A16 A17 L18 K19 T21 R22 K23 A24 R26 Q28 R46 F47 N61 F69 V71 N72 G73 P75 R77 R78 N80 Y83 K108 E129 I130 K156 Q157 A161 S162 K166 N167	S1 W8 A15 A16 L17 K18 T20 R21 K22 A23 R25 Q27 R45 F46 N60 F68 V70 N71 G72 P74 R76 R77 N79 Y82 K107 E110 I111 K137 Q138 A142 S143 K147 N148

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6sv4, PDBe:6sv4, PDBj:6sv4
PDBsum	6sv4
PubMed	32203490
UniProt	Q02326\|RL6A_YEAST Large ribosomal subunit protein eL6A (Gene Name=RPL6A)

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