Structure of PDB 4v4q Chain BM

Receptor sequence

>4v4qBM (length=136) Species: 562 (Escherichia coli)

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

• PDB: 4v4q Structures of the bacterial ribosome at 3.5 A resolution.
• Chain: BM
• Resolution: 3.46 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BM	Q22 R38 M136	Q22 R38 M136
BS02	rna	BM	M1 K8 F9 H13 G15 R16 N17 R18 G19 T24 D25 F28 R44 Q45 R51 R55 K58 W64 R66 F68 E75 K76 A79 V80 R81 M82 G83 K84 G85 E115 F117 K118 L119	M1 K8 F9 H13 G15 R16 N17 R18 G19 T24 D25 F28 R44 Q45 R51 R55 K58 W64 R66 F68 E75 K76 A79 V80 R81 M82 G83 K84 G85 E115 F117 K118 L119

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0000027 ribosomal large subunit assembly
• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v4q, PDBe:4v4q, PDBj:4v4q
• PDBsum: 4v4q
• PubMed: 16272117
• UniProt: P0ADY7|RL16_ECOLI Large ribosomal subunit protein uL16 (Gene Name=rplP)