Structure of PDB 9f1d Chain BL

Receptor sequence

>9f1dBL (length=210) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

APSRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQARARRIAPRPA
AGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPR
RRNKSTESLQANVQRLKEYRSKLVLFPRKPSAPKKGDSSAEELKLATQLT
GPVMPIRNVFKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKE
AAEQDVEKKK

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BL	A2 S4 R5 M8 L10 K11 P12 H13 F14 H15 K16 W18 W25 Q28 P29 R31 K32 I33 R35 R36 R39 R42 R44 R56 V59 R60 C61 P62 V64 Y66 H67 R71 G73 R74 L78 R92 D99 P100 R101 R102 R103 S106 Q115 R158 K162 K163 K165 F179 R183 R186 A187 N188 G193 R195 K197 R198	A1 S3 R4 M7 L9 K10 P11 H12 F13 H14 K15 W17 W24 Q27 P28 R30 K31 I32 R34 R35 R38 R41 R43 R55 V58 R59 C60 P61 V63 Y65 H66 R70 G72 R73 L77 R91 D98 P99 R100 R101 R102 S105 Q114 R157 K161 K162 K164 F178 R182 R185 A186 N187 G192 R194 K196 R197
BS02	rna	BL	F26 N27 A30 R34	F25 N26 A29 R33

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TKB3\|RL13_RABIT Large ribosomal subunit protein eL13 (Gene Name=RPL13)

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