Structure of PDB 4v6r Chain BL

Receptor sequence

>4v6rBL (length=142) Species: 562 (Escherichia coli) [Search protein sequence]

MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDT
GDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERV
IEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI

3D structure

PDB

4v6r Structural characterization of mRNA-tRNA translocation intermediates.

Chain

Resolution

11.5 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BL	K2 T3 K7 E9 G26 R27 T30 A33 R34 R37 K39 P46 H47 Y53 V64 T65 N67 K68 K72 Y75 H77 H80 I81 G82 G83 I84 Q86 T88 E90 R95 R96 E98 R99 K106 G107 M108 P110 K111 G112 P113 L114 R116 R120 L122 K123 Y125 N131 H132 A134 Q135 Q136	K2 T3 K7 E9 G26 R27 T30 A33 R34 R37 K39 P46 H47 Y53 V64 T65 N67 K68 K72 Y75 H77 H80 I81 G82 G83 I84 Q86 T88 E90 R95 R96 E98 R99 K106 G107 M108 P110 K111 G112 P113 L114 R116 R120 L122 K123 Y125 N131 H132 A134 Q135 Q136

Gene Ontology

	Molecular Function
GO:0003729	mRNA binding
GO:0003735	structural constituent of ribosome
GO:0008270	zinc ion binding
GO:0048027	mRNA 5'-UTR binding
GO:0070180	large ribosomal subunit rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0017148	negative regulation of translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:4v6r, PDBe:4v6r, PDBj:4v6r
PDBsum	4v6r
PubMed	22467828
UniProt	P0AA10\|RL13_ECOLI Large ribosomal subunit protein uL13 (Gene Name=rplM)