Structure of PDB 9f1d Chain BJ

Receptor sequence

>9f1dBJ (length=170) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

KENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTV
RSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGF
GIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI
SKEEAMRWFQQKYDGIILPG

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	BJ	K19 C21 N23 C25 G27 S51 A53 R54 S59 F60 I62 A69 H71 N97 N98 S100 D101 T102 N104 G106 F107 G108 G127 D129 Y131 K145	K12 C14 N16 C18 G20 S44 A46 R47 S52 F53 I55 A62 H64 N90 N91 S93 D94 T95 N97 G99 F100 G101 G120 D122 Y124 K138
BS02	rna	BJ	M12 R13 Q46 T47 V49 C72 T73 R75 P137 G138 S140 I141 D143 K144 R146 C150 I151 G152 A153 H155 R156	M5 R6 Q39 T40 V42 C65 T66 R68 P130 G131 S133 I134 D136 K137 R139 C143 I144 G145 A146 H148 R149
BS03	rna	BJ	R58 R64	R51 R57

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182
UniProt	G1TUB8\|RL11_RABIT Large ribosomal subunit protein uL5 (Gene Name=RPL11)

[Back to BioLiP]