Structure of PDB 6ydp Chain BJ

Receptor sequence

>6ydpBJ (length=212) Species: 9823 (Sus scrofa) [Search protein sequence]

GSKAVTRHRRVMHFERQKLMAVTEYIPPKPTINPRCLPPPPTPPQEETGL
VRLLRREIAAVFRDNRMIAVCQHVALSAEDKLLLRHQLRKHKILMKIFPN
QVLKPFLEESKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKGIPFLPLLG
GCIDDTILSRQGFINYSKLPSLALVQGELVGGLTFLTAQTYSMLQHQPRQ
LTALLDQYVKQQ

3D structure

PDB

6ydp Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Chain

Resolution

3.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	peptide	BJ	Y194 L197 L200 V203 E206 G210 F213 L214	Y166 L169 L172 V175 E178 G182 F185 L186
BS02	peptide	BJ	Y219 L222	Y191 L194
BS03	peptide	BJ	L214 T218 M221 Q225	L186 T190 M193 Q197
BS04	peptide	BJ	T230 L233	T202 L205
BS05	peptide	BJ	Q228 L229 L232	Q200 L201 L204
BS06	rna	BJ	G29 S30 K31 V33 R35 R38 H41 K46 A106 R113 I125 P127 N128 V148 G149 H150	G1 S2 K3 V5 R7 R10 H13 K18 A78 R85 I97 P99 N100 V120 G121 H122

Gene Ontology

	Cellular Component
GO:0005840	ribosome
GO:1990904	ribonucleoprotein complex

View graph for
Cellular Component

External links

PDB	RCSB:6ydp, PDBe:6ydp, PDBj:6ydp
PDBsum	6ydp
PubMed	32602580
UniProt	F1RWJ0

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