Structure of PDB 6i7o Chain BJ

Receptor sequence

>6i7oBJ (length=159) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKG
MPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKC
RQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTL
APVPYETFI

3D structure

PDB

6i7o Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.

Chain

Resolution

5.3 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BJ	K3 S4 H5 G6 Y7 R8 S9 R10 T11 R12 Y13 M14 F15 Q16 R17 H22 G23 K35 D41 S47 Q49 K50 G51 K55 Y57 G59 K60 T61 T68 K69 S70 S71 K78 R83 L85 K87 R88 N90 K100 C101 R102 F105 R108 V109 R116 K120 V126 Q127 K129 R130	K2 S3 H4 G5 Y6 R7 S8 R9 T10 R11 Y12 M13 F14 Q15 R16 H21 G22 K34 D40 S46 Q48 K49 G50 K54 Y56 G58 K59 T60 T67 K68 S69 S70 K77 R82 L84 K86 R87 N89 K99 C100 R101 F104 R107 V108 R115 K119 V125 Q126 K128 R129
BS02	rna	BJ	R20 H26 L27 S28	R19 H25 L26 S27

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6i7o, PDBe:6i7o, PDBj:6i7o
PDBsum	6i7o
PubMed	30609991
UniProt	Q02753\|RL21A_YEAST Large ribosomal subunit protein eL21A (Gene Name=RPL21A)

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