Structure of PDB 9f1d Chain BG

Receptor sequence

>9f1dBG (length=233) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKV
PPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAKRP
PVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCI
LKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEI
RRHWGGNVLGPKSVARIAKLEKAKAKELATKLG

3D structure

PDB

9f1d NAC guides a ribosomal multienzyme complex for nascent protein processing.

Chain

Resolution

3.26 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BG	E33 K34 R35 P36 K37 N38 F39 G40 I41 Q43 I45 Q46 L51 R53 F54 K56 P58 R59 Y60 R62 I69 L70 R73 L74 K75 E105 Q108 K110 R113 R132 A138 G139 V140 N141 T142 D162 L166 K187 A188 R192 R196 K197 T198 C199 T200 P244 K245 S246 K252	E7 K8 R9 P10 K11 N12 F13 G14 I15 Q17 I19 Q20 L25 R27 F28 K30 P32 R33 Y34 R36 I43 L44 R47 L48 K49 E79 Q82 K84 R87 R99 A105 G106 V107 N108 T109 D129 L133 K154 A155 R159 R163 K164 T165 C166 T167 P211 K212 S213 K219
BS02	rna	BG	T52 Y60 I61 Q64 R65 R89 H159 D160 R189	T26 Y34 I35 Q38 R39 R63 H126 D127 R156

External links

PDB	RCSB:9f1d, PDBe:9f1d, PDBj:9f1d
PDBsum	9f1d
PubMed	39169182

[Back to BioLiP]