Structure of PDB 4v6q Chain BG

Receptor sequence

>4v6qBG (length=178) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK

3D structure

PDB

4v6q Structural characterization of mRNA-tRNA translocation intermediates.

Chain

Resolution

11.5 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BG	A1 H4 S23 M25 Q26 R29 K32 K63 L65 K87 R91 G92 E93 W96 R124 T158	A1 H4 S23 M25 Q26 R29 K32 K63 L65 K87 R91 G92 E93 W96 R124 T158
BS02	rna	BG	T34 N36 G38 V39 E41 R70 K71 F76 Y82 I84 R114 G115 S120 D122 N126 Y127 S128 G130 R132 V148 G150 L151 D152 T154 T156	T34 N36 G38 V39 E41 R70 K71 F76 Y82 I84 R114 G115 S120 D122 N126 Y127 S128 G130 R132 V148 G150 L151 D152 T154 T156

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4v6q, PDBe:4v6q, PDBj:4v6q
PDBsum	4v6q
PubMed	22467828
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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