Structure of PDB 4v6m Chain BG

Receptor sequence

>4v6mBG (length=176) Species: 83333 (Escherichia coli K-12) [Search protein sequence]

SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLT
FGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGN
VINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAY
RRPEPYKGKGVRYADEVVRTKEAKKK

3D structure

PDB

4v6m Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.

Chain

Resolution

7.1 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	BG	S1 R2 V3 K5 R34 L36 N37 D38 A62 Q63 T66 L70 F108 S109 H110 K137 Q138 G141 Q142 R152 E154 P155 Y156 K157 K159 R169 T170 K171 E172 A173 K174 K175 K176	S1 R2 V3 K5 R34 L36 N37 D38 A62 Q63 T66 L70 F108 S109 H110 K137 Q138 G141 Q142 R152 E154 P155 Y156 K157 K159 R169 T170 K171 E172 A173 K174 K175 K176

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0070180	large ribosomal subunit rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0046677	response to antibiotic

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:4v6m, PDBe:4v6m, PDBj:4v6m
PDBsum	4v6m
PubMed	21499241
UniProt	P0AG55\|RL6_ECOLI Large ribosomal subunit protein uL6 (Gene Name=rplF)

[Back to BioLiP]