Structure of PDB 4v5h Chain BG

Receptor sequence
>4v5hBG (length=175) Species: 562 (Escherichia coli) [Search protein sequence]
SRVAKAPVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTF
GPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYR
RPEPYKGKGVRYADEVVRTKEAKKK
3D structure
PDB4v5h Structural insight into nascent polypeptide chain-mediated translational stalling.
ChainBG
Resolution5.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna BG S1 R2 V3 D38 A62 Q63 G65 T66 L70 G107 F108 S109 H110 K137 Q138 G141 Q142 R151 R152 P155 Y156 K157 K159 K171 K174 K175 K176 S1 R2 V3 D37 A61 Q62 G64 T65 L69 G106 F107 S108 H109 K136 Q137 G140 Q141 R150 R151 P154 Y155 K156 K158 K170 K173 K174 K175
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0046677 response to antibiotic
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4v5h, PDBe:4v5h, PDBj:4v5h
PDBsum4v5h
PubMed19933110
UniProtP0AG55|RL6_ECOLI Large ribosomal subunit protein uL6 (Gene Name=rplF)

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