Structure of PDB 7q4k Chain BF

Receptor sequence

>7q4kBF (length=177) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

3D structure

PDB

7q4k Regulation and mechanical basis of macrolide resistance by the ABC-F ATPase MsrD

Chain

Resolution

3.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	BF	N37 M38 G39 V40 G41 T68 A70 R71 K72 F77 I79 I85 K88 S121 F122 D123 N127 S129 G131 V132 R133 G151 L152 D153 T155	N36 M37 G38 V39 G40 T67 A69 R70 K71 F76 I78 I84 K87 S120 F121 D122 N126 S128 G130 V131 R132 G150 L151 D152 T154
BS02	rna	BF	M26 Q63 K64 L66 T90 R92	M25 Q62 K63 L65 T89 R91
BS03	rna	BF	S73 A75	S72 A74

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7q4k, PDBe:7q4k, PDBj:7q4k
PDBsum	7q4k
PubMed	37393329
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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