Structure of PDB 6ztl Chain BF

Receptor sequence

>6ztlBF (length=178) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK

3D structure

PDB

6ztl Structural basis of transcription-translation coupling and collision in bacteria.

Chain

Resolution

3.5 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	BF	A75 R80	A74 R79
BS02	rna	BF	K33 N37 M38 G39 G41 T68 R71 K72 F77 I85 K88 S121 F122 R125 N127 S129 M130 R133 G151 D153 T155 T157	K32 N36 M37 G38 G40 T67 R70 K71 F76 I84 K87 S120 F121 R124 N126 S128 M129 R132 G150 D152 T154 T156
BS03	rna	BF	S24 M26 Q27 Q63 K64 L66 T90 R92	S23 M25 Q26 Q62 K63 L65 T89 R91

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6ztl, PDBe:6ztl, PDBj:6ztl
PDBsum	6ztl
PubMed	32820062
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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