Structure of PDB 6skf Chain BF

Receptor sequence
>6skfBF (length=169) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence]
NREAILADWEAHPMRKPRIAKVTINIGVGESGERLTKAETMLEQLVGQKP
IRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASN
FDEHGNFCFGIQEHINIPGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKH
KLTKEEGIVFAMEELKAKV
3D structure
PDB6skf Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping.
ChainBF
Resolution2.95 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna BF N28 G30 F65 N103 D105 C111 G113 D135 K151 N25 G27 F62 N100 D102 C108 G110 D124 K140
BS02 rna BF H15 M17 K52 I54 P143 G144 R146 R150 R155 K160 H12 M14 K49 I51 P132 G133 R135 R139 R144 K149
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6skf, PDBe:6skf, PDBj:6skf
PDBsum6skf
PubMed32555463
UniProtQ5JJG1|RL5_THEKO Large ribosomal subunit protein uL5 (Gene Name=rpl5)

[Back to BioLiP]